DUFFY, SIOBAIN: search on Z-Library

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1

Why are RNA virus mutation rates so damn high?

Journal:

Year:

2018

Language:

english

File:

PDF, 965 KB

english, 2018

2

New experimental and theoretical approaches towards the understanding of the emergence of viral infections || 98% identical, 100% wrong: per cent nucleotide identity can lead plant virus epidemiology astray

Siobain Duffy and Yee Mey Seah

Journal:

Philosophical Transactions Biological Sciences

Year:

2010

Language:

english

File:

PDF, 1.34 MB

english, 2010

3

Base Composition and Translational Selection are Insufficient to Explain Codon Usage Bias in Plant Viruses

Cardinale, Daniel, DeRosa, Kate, Duffy, Siobain

Journal:

Year:

2013

Language:

english

File:

PDF, 638 KB

english, 2013

4

Vector-Enabled Metagenomic (VEM) Surveys Using Whiteflies (Aleyrodidae) Reveal Novel Begomovirus Species in the New and OldWorlds

Rosario, Karyna, Seah, Yee, Marr, Christian, Varsani, Arvind, Kraberger, Simona, Stainton, Daisy, Moriones, Enrique, Polston, Jane, Duffy, Siobain, Breitbart, Mya

Journal:

Year:

2015

Language:

english

File:

PDF, 1.78 MB

english, 2015

5

A field guide to eukaryotic circular single-stranded DNA viruses: insights gained from metagenomics

Karyna Rosario, Siobain Duffy, Mya Breitbart

Journal:

Archives of Virology

Year:

2012

Language:

english

File:

PDF, 1.31 MB

english, 2012

6

Whitefly-transmitted viruses threatening cassava production in Africa

Jacobson, Alana Lynn, Duffy, Siobain, Sseruwagi, Peter

Journal:

Current Opinion in Virology

Year:

2018

Language:

english

File:

PDF, 1.13 MB

english, 2018

7

Monte Carlo simulation of the risk of contamination of apples with Escherichia coli O157:H7

Siobain Duffy, Donald W Schaffner

Journal:

International Journal of Food Microbiology

Year:

2002

Language:

english

File:

PDF, 189 KB

english, 2002

8

Deep Sequencing Reveals a Divergent Ugandan cassava brown streak virus Isolate from Malawi

Mbewe, Willard, Winter, Stephan, Mukasa, Settumba, Tairo, Fred, Sseruwagi, Peter, Ndunguru, Joseph, Duffy, Siobain

Journal:

Genome Announcements

Year:

2017

Language:

english

File:

PDF, 121 KB

english, 2017

9

Genetic Diversity in the 3′ Terminal 4.7-kb Region of Grapevine leafroll-associated virus 3

Wang, Jinbo, Sharma, Abhineet M., Duffy, Siobain, Almeida, Rodrigo P. P.

Journal:

Year:

2011

Language:

english

File:

PDF, 216 KB

english, 2011

10

Modelling mould spoilage in cold-filled ready-to-drink beverages by Aspergillus niger and Penicillium spinulosum

Alyce Stiles Battey, Siobain Duffy, Donald W. Schaffner

Journal:

Food Microbiology

Year:

2001

Language:

english

File:

PDF, 382 KB

english, 2001

11

Evolutionary genomics of host-use in bifurcating demes of RNA virus phi-6

Paul E Turner, Robert C McBride, Siobain Duffy, Rebecca Montville, Li-San Wang, Yul W Yang, Sun Jin Lee, Junhyong Kim

Journal:

BMC Evolutionary Biology

Year:

2012

Language:

english

File:

PDF, 487 KB

english, 2012

12

Antibiotic resistance correlates with transmission in plasmid evolution

Turner, Paul E., Williams, Elizabeth S. C. P., Okeke, Chijioke, Cooper, Vaughn S., Duffy, Siobain, Wertz, John E.

Journal:

Year:

2014

Language:

english

File:

PDF, 642 KB

english, 2014

13

Evolution of Host Specificity Drives Reproductive Isolation among RNA Viruses

Siobain Duffy, Christina L. Burch and Paul E. Turner

Journal:

Year:

2007

Language:

english

File:

PDF, 1.37 MB

english, 2007

14

Site-Specific, Enzymatic Biotinylation of Recombinant Proteins inSpodoptera frugiperdaCells Using Biotin Acceptor Peptides

Siobain Duffy, Kwei-Lan Tsao, David S. Waugh

Journal:

Analytical Biochemistry

Year:

1998

Language:

english

File:

PDF, 160 KB

english, 1998

15

Experimental evidence indicating that mastreviruses probably did not co-diverge with their hosts

Gordon W Harkins, Wayne Delport, Siobain Duffy, Natasha Wood, Adérito L Monjane, Betty E Owor, Lara Donaldson, Salem Saumtally, Guy Triton, Rob W Briddon, Dionne N Shepherd, Edward P Rybicki, Darren P

Journal:

Virology Journal

Year:

2009

Language:

english

File:

PDF, 483 KB

english, 2009

16

EVOLUTION OF HOST SPECIFICITY DRIVES REPRODUCTIVE ISOLATION AMONG RNA VIRUSES

Siobain Duffy, Christina L. Burch, Paul E. Turner

Journal:

Year:

2007

Language:

english

File:

PDF, 147 KB

english, 2007

17

Erratum to: A field guide to eukaryotic circular single-stranded DNA viruses: insights gained from metagenomics

Karyna Rosario, Siobain Duffy, Mya Breitbart

Journal:

Archives of Virology

Year:

2012

Language:

english

File:

PDF, 244 KB

english, 2012

18

Cell Tropism Predicts Long-term Nucleotide Substitution Rates of Mammalian RNA Viruses

Hicks, Allison L., Duffy, Siobain, Sanjuan, Rafael

Journal:

Year:

2014

Language:

english

File:

PDF, 851 KB

english, 2014

19

Single-stranded genomic architecture constrains optimal codon usage

Cardinale, Daniel J., Duffy, Siobain

Journal:

Year:

2011

Language:

english

File:

PDF, 881 KB

english, 2011

20

Modeling the Survival of Escherichia coli O157:H7 in Apple Cider Using Probability Distribution Functions for Quantitative Risk Assessment

DUFFY, SIOBAIN, SCHAFFNER, DONALD W.

Journal:

Journal of Food Protection

Year:

2001

Language:

english

File:

PDF, 188 KB

english, 2001

21

Simulation and modelling of the effect of small inoculum size on time to spoilage by Bacillus stearothermophilus

Maximo K. Llaudes, Lihui Zhao, Siobain Duffy, Donald W. Schaffner

Journal:

Food Microbiology

Year:

2001

Language:

english

File:

PDF, 402 KB

english, 2001

22

Analysis and Modeling of the Variability Associated with UV Inactivation of Escherichia coli in Apple Cider

DUFFY, SIOBAIN, CHUREY, JOHN, WOROBO, RANDY W., SCHAFFNER, DONALD W.

Journal:

Journal of Food Protection

Year:

2000

Language:

english

File:

PDF, 184 KB

english, 2000

23

A multispecies polyadenylation site model

Eric S Ho, Samuel I Gunderson, Siobain Duffy

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 462 KB

english, 2013

24

The diversification of begomovirus populations is predominantly driven by mutational dynamics

Lima, Alison T. M., Silva, José C. F., Silva, Fábio N., Castillo-Urquiza, Gloria P., Silva, Fabyano F., Seah, Yee M., Mizubuti, Eduardo S. G., Duffy, Siobain, Zerbini, F. Murilo

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 1.09 MB

english, 2017

25

Two Nearly Complete Nosocomial Pathogen Genome Sequences Reconstructed from Early-Middle 20th-Century Dental Calculus

Williams, LaShanda, Cugini, Carla, Duffy, Siobain, Baltrus, David A.

Journal:

Microbiology Resource Announcements

Year:

2020

File:

PDF, 228 KB

2020

26

Deeply Sequenced Infectious Clones of Key Cassava Begomovirus Isolates from Cameroon

Hoyer, J. Steen, Fondong, Vincent N., Dallas, Mary M., Aimone, Catherine Doyle, Deppong, David O., Duffy, Siobain, Hanley-Bowdoin, Linda, Stedman, Kenneth M.

Journal:

Microbiology Resource Announcements

Year:

2020

File:

PDF, 434 KB

2020

27

One misdated sequence of rabbit hemorrhagic disease virus prevents accurate estimation of its nucleotide substitution rate

Allison L Hicks, Siobain Duffy

Journal:

BMC Evolutionary Biology

Year:

2012

Language:

english

File:

PDF, 753 KB

english, 2012

28

Quantitative risk assessment of microbial sampling effectiveness

Siobain Duffy, Donald W. Schaffner

Journal:

Clinical Microbiology Newsletter

Year:

2002

Language:

english

File:

PDF, 536 KB

english, 2002

29

Rates of evolutionary change in viruses: patterns and determinants

Duffy, Siobain, Shackelton, Laura A., Holmes, Edward C.

Journal:

Nature Reviews Genetics

Year:

2008

Language:

english

File:

PDF, 459 KB

english, 2008

30

Overlooking the smallest matter: viruses impact biological invasions

Faillace, Cara A., Lorusso, Nicholas S., Duffy, Siobain, Cleland, Elsa

Journal:

Ecology Letters

Year:

2017

Language:

english

File:

PDF, 1.07 MB

english, 2017

31

Gauging genetic diversity of generalists: A test of genetic and ecological generalism with RNA virus experimental evolution

Zhao, Lele, Duffy, Siobain

Journal:

Virus Evolution

Year:

2019

Language:

english

File:

PDF, 289 KB

english, 2019

32

Existing host range mutations constrain further emergence of RNA viruses

Zhao, Lele, Seth Pasricha, Mansha, Stemate, Dragoş, Crespo-Bellido, Alvin, Gagnon, Jacqueline, Draghi, Jeremy, Duffy, Siobain

Journal:

Journal of Virology

Year:

2018

Language:

english

File:

PDF, 1.40 MB

english, 2018

33

Virtual Boot Camp: COVID â19 evolution and structural biology

Burley, Stephen K., Bromberg, Yana, Craig, Paul, Duffy, Siobain, Dutta, Shuchismita, Hall, Bonnie L., Hudson, Brian P., Jiang, Jennifer, Khare, Sagar, Koeppe, Julia R., Lubin, Joseph H., Mills, Stephe

Journal:

Biochemistry and Molecular Biology Education

Year:

2020

File:

PDF, 671 KB

2020

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